How to eliminate the indexing of all domains over HTTPS of the main site on the server?

Question

ubuntu

Guys, please tell me how to eliminate the nuance with the indexing of domains on the server.
There is a VDS server in first.vds. It has 15 sites hanging on it, some have an SSL certificate, and some do not.
The fact is that recently all domains were indexed and got into the webmaster. Moreover, domains without SSL were indexed, but under the https protocol, and the same site hangs there (on all domains that do not have an SSL certificate, the same site hangs under the https protocol).
I can't understand how it happened and how to fix it.

Webmaster screenshot