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I have done this (I use Gnome3):
Created a shortcut on the desktop:
[Desktop Entry]
Name=PyCharm
Comment=Среда разработки PyCharm
GenericName=PyCharm
Keywords=PyCharm;Python;Django;IDE;
Exec=/home/des/pycharm-root.sh
Terminal=false
Type=Application
Icon=/home/des/pycharm/bin/pycharm.png
#!/bin/bash
sudo -u root /home/des/pycharm/bin/pycharm.sh
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