How to properly set up Google authenticator on a VPS?

Question

CentOS

I connect via SFTP to a VPS on Centos 7 with google authenticator configured for two-factor authentication.
The problem is that after each file change, the Server asks for a password and a temporary code for re-authorization.

Config /etc/pam.d/sshd

#%PAM-1.0
auth required pam_sepermit.so
auth substack password-auth
auth include postlogin
# Used with polkit to reauthorize users in remote sessions
-auth optional pam_reauthorize.so prepare
account required pam_nologin.so
account include password-auth
password include password-auth
# pam_selinux.so close should be the first session rule
session required pam_selinux.so close
session required pam_loginuid.so
# pam_selinux.so open should only be followed by sessions to be executed in the user context
session required pam_selinux.so open env_params
session required pam_namespace.so
session optional pam_keyinit.so force revoke
session include password-auth
session include postlogin
# Used with polkit to reauthorize users in remote sessions
-session optional pam_reauthorize.so prepare
auth required pam_google_authenticator.so nullok

Config /etc/ssh/sshd_config

# $OpenBSD: sshd_config,v 1.100 2016/08/15 12:32:04 naddy Exp $

# This is the sshd server system-wide configuration file. See
# sshd_config(5) for more information.

# This sshd was compiled with PATH=/usr/local/bin:/usr/bin

# The strategy used for options in the default sshd_config shipped with
# OpenSSH is to specify options with their default value where
# possible, but leave them commented. Uncommented options override the
# default value.

# If you want to change the port on a SELinux system, you have to tell
# SELinux about this change.
# semanage port -a -t ssh_port_t -p tcp #PORTNUMBER
#
#Port 22
#AddressFamily any
#ListenAddress 0.0.0.0
#ListenAddress ::

HostKey /etc/ssh/ssh_host_rsa_key
#HostKey /etc/ssh/ssh_host_dsa_key
HostKey /etc/ssh/ssh_host_ecdsa_key
HostKey /etc/ssh/ssh_host_ed25519_key

# Ciphers and keying
#RekeyLimit default none

# Logging
#SyslogFacility AUTH
SyslogFacility AUTHPRIV
#LogLevel INFO

# Authentication:

LoginGraceTime 0
#PermitRootLogin yes
#StrictModes yes
#MaxAuthTries 6
#MaxSessions 10

#PubkeyAuthentication yes

# The default is to check both .ssh/authorized_keys and .ssh/authorized_keys2
# but this is overridden so installations will only check .ssh/authorized_keys
AuthorizedKeysFile .ssh/authorized_keys

#AuthorizedPrincipalsFile none

#AuthorizedKeysCommand none
#AuthorizedKeysCommandUser nobody

# For this to work you will also need host keys in /etc/ssh/ssh_known_hosts
#HostbasedAuthentication no
# Change to yes if you don't trust ~/.ssh/known_hosts for
# HostbasedAuthentication
#IgnoreUserKnownHosts no
# Don't read the user's ~/.rhosts and ~/.shosts files
#IgnoreRhosts yes

# To disable tunneled clear text passwords, change to no here!
#PasswordAuthentication yes
#PermitEmptyPasswords no
PasswordAuthentication yes

# Change to no to disable s/key passwords
#ChallengeResponseAuthentication yes
ChallengeResponseAuthentication yes

# Kerberos options
#KerberosAuthentication no
#KerberosOrLocalPasswd yes
#KerberosTicketCleanup yes
#KerberosGetAFSToken no
#KerberosUseKuserok yes

# GSSAPI options
GSSAPIAuthentication yes
GSSAPICleanupCredentials no
#GSSAPIStrictAcceptorCheck yes
#GSSAPIKeyExchange no
#GSSAPIEnablek5users no

# Set this to 'yes' to enable PAM authentication, account processing,
# and session processing. If this is enabled, PAM authentication will
# be allowed through the ChallengeResponseAuthentication and
# PasswordAuthentication. Depending on your PAM configuration,
# PAM authentication via ChallengeResponseAuthentication may bypass
# the setting of "PermitRootLogin without-password".
# If you just want the PAM account and session checks to run without
# PAM authentication, then enable this but set PasswordAuthentication
# and ChallengeResponseAuthentication to 'no'.
# WARNING: 'UsePAM no' is not supported in Red Hat Enterprise Linux and may cause several
# problems.
UsePAM yes

#AllowAgentForwarding yes
#AllowTcpForwarding yes
#GatewayPorts no
X11Forwarding yes
#X11DisplayOffset 10
#X11UseLocalhost yes
#PermitTTY yes
#PrintMotd yes
#PrintLastLog yes
#TCPKeepAlive yes
#UseLogin no
#UsePrivilegeSeparation sandbox
#PermitUserEnvironment no
#Compression delayed
#ClientAliveInterval 0
#ClientAliveCountMax 3
#ShowPatchLevel no
#UseDNS yes
#PidFile /var/run/sshd.pid
#MaxStartups 10:30:100
#PermitTunnel no
#ChrootDirectory none
#VersionAddendum none

# no default banner path
#Banner none

# Accept locale-related environment variables
AcceptEnv LANG LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE LC_MONETARY LC_MESSAGES
AcceptEnv LC_PAPER LC_NAME LC_ADDRESS LC_TELEPHONE LC_MEASUREMENT
AcceptEnv LC_IDENTIFICATION LC_ALL LANGUAGE
AcceptEnv XMODIFIERS

# override default of no subsystems
Subsystem sftp /usr/libexec/openssh/sftp-server

# Example of overriding settings on a per-user basis
#Match User anoncvs
# X11Forwarding no
# AllowTcpForwarding no
# PermitTTY no
# ForceCommand cvs server